#Head information NAME 13aa0 TYPE alpha-alpha REPRESENTATIVE 1ycc_76 MEMBERS 11 CLUSTER 1 #Loop element > 1ycc_76 pkkyIPGTKMAFGGLKKekdrndlitylkka 13aa0_0.pdb 0 > 1csu_76 pkkyIPGTKMAFGGCKKekdrndlitylkka 13aa0_1.pdb 0 > 1csw_76 pkkyIPGTKMAFGGMKKekdrndlitylkka 13aa0_2.pdb 0 > 1chh_76 pkkyIPGTKMAYGGLKKekdrndlitylkka 13aa0_3.pdb 0 > 1cih_76 pkkyIPGTKMASGGLKKekdrndlitylkka 13aa0_4.pdb 0 > 1chj_76 pkkyIPGTKMAFGGAKKekdrndlitylkka 13aa0_5.pdb 0 > 1chi_76 pkkyIPGTKMAYGGAKKekdrndlitylkka 13aa0_6.pdb 0 > 1csv_76 pkkyIPGTKMAFGGFKKekdrndlitylkka 13aa0_7.pdb 0 > 1ytc_80 pkkyIPGTKMAFAGLKKekdrndlitymtka 13aa0_8.pdb 0 > 1ccr_79 pkkyIPGTKMVFPGLKKpqeradlisylkea 13aa0_9.pdb 0 >5cyt-R_71 pkkyIPGTKMIFAGIKKkgerqdlvaylksa 13aa0_10.pdb 0 #Motif sequence PKKYIPGTKMAFGGLKKEKDRNDLITYLKKA PKKYIPGTKMAFGGCKKEKDRNDLITYLKKA PKKYIPGTKMAFGGMKKEKDRNDLITYLKKA PKKYIPGTKMAYGGLKKEKDRNDLITYLKKA PKKYIPGTKMASGGLKKEKDRNDLITYLKKA PKKYIPGTKMAFGGAKKEKDRNDLITYLKKA PKKYIPGTKMAYGGAKKEKDRNDLITYLKKA PKKYIPGTKMAFGGFKKEKDRNDLITYLKKA PKKYIPGTKMAFAGLKKEKDRNDLITYMTKA PKKYIPGTKMVFPGLKKPQERADLISYLKEA PKKYIPGTKMIFAGIKKKGERQDLVAYLKSA #Loop sequence IPGTKMAFGGLKK IPGTKMAFGGCKK IPGTKMAFGGMKK IPGTKMAYGGLKK IPGTKMASGGLKK IPGTKMAFGGAKK IPGTKMAYGGAKK IPGTKMAFGGFKK IPGTKMAFAGLKK IPGTKMVFPGLKK IPGTKMIFAGIKK #Fingerprint I P G T K M A F G G L K K : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : : A : : : : : : : : : : : : : : : : : : : : : : : : : C : : : : : : : : : Y A : F : : : : : : : : I : : : I : : : : : : : : V S P : M : : #Geometry parameters DISTANCE 17.65 ( 0.08) Vector1 ( -0.09 -0.99 0.05) Vector2 ( 0.83 0.55 0.13) Vector3 ( -0.44 0.52 -0.73) Struc diversity(A) ( 0.5 0.7 0.7 0.6 0.8 0.6 0.8 0.8 1.1 0.7 0.7 1.0 0.6) #RMSD matrix of conformation of loops (A) 0.00 0.15 0.18 0.25 0.31 0.31 0.32 0.35 0.37 0.35 0.35 0.15 0.00 0.12 0.26 0.28 0.28 0.34 0.34 0.31 0.32 0.40 0.18 0.12 0.00 0.28 0.32 0.29 0.37 0.36 0.32 0.33 0.39 0.25 0.26 0.28 0.00 0.29 0.36 0.36 0.40 0.34 0.33 0.35 0.31 0.28 0.32 0.29 0.00 0.41 0.43 0.41 0.41 0.32 0.45 0.31 0.28 0.29 0.36 0.41 0.00 0.23 0.29 0.32 0.47 0.49 0.32 0.34 0.37 0.36 0.43 0.23 0.00 0.30 0.39 0.52 0.52 0.35 0.34 0.36 0.40 0.41 0.29 0.30 0.00 0.41 0.50 0.57 0.37 0.31 0.32 0.34 0.41 0.32 0.39 0.41 0.00 0.45 0.52 0.35 0.32 0.33 0.33 0.32 0.47 0.52 0.50 0.45 0.00 0.36 0.35 0.40 0.39 0.35 0.45 0.49 0.52 0.57 0.52 0.36 0.00 #Sequence identities difference matrix of loop (%) 0.0 8.0 8.0 8.0 8.0 8.0 15.0 8.0 8.0 15.0 23.0 8.0 0.0 8.0 15.0 15.0 8.0 15.0 8.0 15.0 23.0 23.0 8.0 8.0 0.0 15.0 15.0 8.0 15.0 8.0 15.0 23.0 23.0 8.0 15.0 15.0 0.0 8.0 15.0 8.0 15.0 15.0 23.0 31.0 8.0 15.0 15.0 8.0 0.0 15.0 15.0 15.0 15.0 23.0 31.0 8.0 8.0 8.0 15.0 15.0 0.0 8.0 8.0 15.0 23.0 23.0 15.0 15.0 15.0 8.0 15.0 8.0 0.0 15.0 23.0 31.0 31.0 8.0 8.0 8.0 15.0 15.0 8.0 15.0 0.0 15.0 23.0 23.0 8.0 15.0 15.0 15.0 15.0 15.0 23.0 15.0 0.0 15.0 15.0 15.0 23.0 23.0 23.0 23.0 23.0 31.0 23.0 15.0 0.0 23.0 23.0 23.0 23.0 31.0 31.0 23.0 31.0 23.0 15.0 23.0 0.0 #Sequence identities difference matrix of motif (%) 0.0 3.0 3.0 3.0 3.0 3.0 6.0 3.0 10.0 26.0 32.0 3.0 0.0 3.0 6.0 6.0 3.0 6.0 3.0 13.0 29.0 32.0 3.0 3.0 0.0 6.0 6.0 3.0 6.0 3.0 13.0 29.0 32.0 3.0 6.0 6.0 0.0 3.0 6.0 3.0 6.0 13.0 29.0 35.0 3.0 6.0 6.0 3.0 0.0 6.0 6.0 6.0 13.0 29.0 35.0 3.0 3.0 3.0 6.0 6.0 0.0 3.0 3.0 13.0 29.0 32.0 6.0 6.0 6.0 3.0 6.0 3.0 0.0 6.0 16.0 32.0 35.0 3.0 3.0 3.0 6.0 6.0 3.0 6.0 0.0 13.0 29.0 32.0 10.0 13.0 13.0 13.0 13.0 13.0 16.0 13.0 0.0 32.0 35.0 26.0 29.0 29.0 29.0 29.0 29.0 32.0 29.0 32.0 0.0 29.0 32.0 32.0 32.0 35.0 35.0 32.0 35.0 32.0 35.0 29.0 0.0 #Sequence identities difference matrix of global PDB chains (%) 0.0 2.0 2.0 2.0 4.0 2.0 3.0 2.0 20.0 45.0 42.0 2.0 0.0 1.0 2.0 5.0 1.0 2.0 1.0 21.0 45.0 41.0 2.0 1.0 0.0 2.0 5.0 1.0 2.0 1.0 21.0 45.0 41.0 2.0 2.0 2.0 0.0 4.0 2.0 1.0 2.0 21.0 45.0 42.0 4.0 5.0 5.0 4.0 0.0 5.0 5.0 5.0 20.0 46.0 44.0 2.0 1.0 1.0 2.0 5.0 0.0 1.0 1.0 21.0 45.0 41.0 3.0 2.0 2.0 1.0 5.0 1.0 0.0 2.0 21.0 46.0 42.0 2.0 1.0 1.0 2.0 5.0 1.0 2.0 0.0 21.0 45.0 41.0 20.0 21.0 21.0 21.0 20.0 21.0 21.0 21.0 0.0 49.0 48.0 45.0 45.0 45.0 45.0 46.0 45.0 46.0 45.0 49.0 0.0 45.0 42.0 41.0 41.0 42.0 44.0 41.0 42.0 41.0 48.0 45.0 0.0 #FASTA SCORE matrix of loop sequence - 80 85 83 76 80 76 83 79 72 70 - - 80 76 69 81 77 80 72 65 66 - - - 81 74 81 77 82 77 70 70 - - - - 77 76 80 79 75 68 66 - - - - - 69 70 72 68 61 59 - - - - - - 83 79 72 65 67 - - - - - - - 75 68 61 63 - - - - - - - - 75 68 68 - - - - - - - - - 73 75 - - - - - - - - - - 74 - - - - - - - - - - - #FASTA SCORE matrix of motif sequence - 197 202 200 193 197 193 200 187 156 149 - - 197 193 186 198 194 197 180 149 145 - - - 198 191 198 194 199 185 154 149 - - - - 194 193 197 196 183 152 145 - - - - - 186 187 189 176 145 138 - - - - - - 200 196 180 149 146 - - - - - - - 192 176 145 142 - - - - - - - - 183 152 147 - - - - - - - - - 148 145 - - - - - - - - - - 154 - - - - - - - - - - - #FASTA SCORE matrix of global PDB chain sequence - 719 724 722 696 719 715 722 604 426 442 - - 725 721 690 726 722 725 598 425 444 - - - 726 695 726 722 727 603 430 448 - - - - 698 721 725 724 601 428 444 - - - - - 690 691 693 598 401 413 - - - - - - 728 724 598 425 445 - - - - - - - 720 594 421 441 - - - - - - - - 601 428 446 - - - - - - - - - 413 407 - - - - - - - - - - 413 - - - - - - - - - - -