#Head information NAME 2ab1 TYPE alpha-beta REPRESENTATIVE 1xaa_55 MEMBERS 13 CLUSTER 4 #Loop element > 1xaa_55 .......eptrkgveeAEavllgs..... 2ab1_0.pdb 0 > 1phr_78 ............dfvtFDyilc....... 2ab1_1.pdb 0 > 5p21_65 ......samrdqymrtGEgflcvfa.... 2ab1_2.pdb 0 > 1dar_63 ......tieversmrvLDgaivvfd.... 2ab1_3.pdb 0 >1qrd-A_84 ......ivaeqkkleaADlvifqf..... 2ab1_4.pdb 0 > 1pbe_150 ..............ldCDyiag....... 2ab1_5.pdb 1 > 1rcf_44 .............lndYQyliig...... 2ab1_6.pdb 2 >3eca-A_71 .......kkintdcdkTDgfvit...... 2ab1_7.pdb 0 > 2reb_188 ..........nalkfyASvrldirrig.. 2ab1_8.pdb 0 > 2bgu_56 .............vndYDrlivv...... 2ab1_9.pdb 0 >1gdh-A_196 .........ldsllsvSQffsl....... 2ab1_10.pdb 2 > 1lvl_133 ..............iqCEhlll....... 2ab1_11.pdb 1 > 1ndh_234 .............peeEPlvl........ 2ab1_12.pdb 3 #Motif sequence .......EPTRKGVEEAEAVLLGS..... ............DFVTFDYILC....... ......SAMRDQYMRTGEGFLCVFA.... ......TIEVERSMRVLDGAIVVFD.... ......IVAEQKKLEAADLVIFQF..... ..............LDCDYIAG....... .............LNDYQYLIIG...... .......KKINTDCDKTDGFVIT...... ..........NALKFYASVRLDIRRIG.. .............VNDYDRLIVV...... .........LDSLLSVSQFFSL....... ..............IQCEHLLL....... .............PEEEPLVL........ #Loop sequence AE FD GE LD AD CD YQ TD AS YD SQ CE EP #Fingerprint A D : : : : C : : : Y : : E E : F : G Q L : S P T S #Geometry parameters DISTANCE 5.66 ( 0.17) Vector1 ( -0.98 -0.22 0.00) Vector2 ( 0.57 0.67 -0.47) Vector3 ( -0.77 0.24 -0.59) Struc diversity(A) ( 3.6 4.4) #RMSD matrix of conformation of loops (A) 0.00 0.76 0.92 1.25 0.68 1.29 1.67 0.91 0.60 0.71 1.63 1.49 3.33 0.76 0.00 0.40 0.60 0.38 1.92 1.23 0.55 0.35 0.16 1.18 1.99 3.16 0.92 0.40 0.00 0.61 0.48 2.10 1.40 0.79 0.40 0.34 1.13 2.20 3.08 1.25 0.60 0.61 0.00 0.79 2.35 1.15 0.65 0.87 0.63 1.29 2.42 2.92 0.68 0.38 0.48 0.79 0.00 1.71 1.16 0.52 0.41 0.28 1.01 1.76 3.16 1.29 1.92 2.10 2.35 1.71 0.00 2.32 1.82 1.83 1.88 2.35 0.51 3.64 1.67 1.23 1.40 1.15 1.16 2.32 0.00 0.86 1.47 1.22 1.11 2.16 3.31 0.91 0.55 0.79 0.65 0.52 1.82 0.86 0.00 0.79 0.53 1.22 1.83 3.07 0.60 0.35 0.40 0.87 0.41 1.83 1.47 0.79 0.00 0.29 1.26 1.95 3.29 0.71 0.16 0.34 0.63 0.28 1.88 1.22 0.53 0.29 0.00 1.15 1.96 3.17 1.63 1.18 1.13 1.29 1.01 2.35 1.11 1.22 1.26 1.15 0.00 2.22 3.29 1.49 1.99 2.20 2.42 1.76 0.51 2.16 1.83 1.95 1.96 2.22 0.00 3.77 3.33 3.16 3.08 2.92 3.16 3.64 3.31 3.07 3.29 3.17 3.29 3.77 0.00 #Sequence identities difference matrix of loop (%) 0.0100.0 50.0100.0 50.0100.0100.0100.0 50.0100.0100.0 50.0100.0 100.0 0.0100.0 50.0 50.0 50.0100.0 50.0100.0 50.0100.0100.0100.0 50.0100.0 0.0100.0100.0100.0100.0100.0100.0100.0100.0 50.0100.0 100.0 50.0100.0 0.0 50.0 50.0100.0 50.0100.0 50.0100.0100.0100.0 50.0 50.0100.0 50.0 0.0 50.0100.0 50.0 50.0 50.0100.0100.0100.0 100.0 50.0100.0 50.0 50.0 0.0100.0 50.0100.0 50.0100.0 50.0100.0 100.0100.0100.0100.0100.0100.0 0.0100.0100.0 50.0 50.0100.0100.0 100.0 50.0100.0 50.0 50.0 50.0100.0 0.0100.0 50.0100.0100.0100.0 50.0100.0100.0100.0 50.0100.0100.0100.0 0.0100.0100.0100.0100.0 100.0 50.0100.0 50.0 50.0 50.0 50.0 50.0100.0 0.0100.0100.0100.0 100.0100.0100.0100.0100.0100.0 50.0100.0100.0100.0 0.0100.0100.0 50.0100.0 50.0100.0100.0 50.0100.0100.0100.0100.0100.0 0.0100.0 100.0100.0100.0100.0100.0100.0100.0100.0100.0100.0100.0100.0 0.0 #Sequence identities difference matrix of motif (%) 0.0 55.0 59.0 66.0 48.0 59.0 55.0 59.0 62.0 55.0 55.0 48.0 45.0 55.0 0.0 55.0 62.0 59.0 24.0 34.0 48.0 55.0 34.0 45.0 31.0 31.0 59.0 55.0 0.0 48.0 62.0 66.0 66.0 59.0 69.0 62.0 59.0 59.0 62.0 66.0 62.0 48.0 0.0 55.0 62.0 62.0 59.0 72.0 52.0 62.0 66.0 66.0 48.0 59.0 62.0 55.0 0.0 59.0 55.0 59.0 69.0 55.0 59.0 62.0 52.0 59.0 24.0 66.0 62.0 59.0 0.0 28.0 56.0 59.0 28.0 45.0 24.0 31.0 55.0 34.0 66.0 62.0 55.0 28.0 0.0 52.0 57.0 17.0 41.0 31.0 34.0 59.0 48.0 59.0 59.0 59.0 56.0 52.0 0.0 66.0 52.0 52.0 55.0 55.0 62.0 55.0 69.0 72.0 69.0 59.0 57.0 66.0 0.0 59.0 59.0 55.0 55.0 55.0 34.0 62.0 52.0 55.0 28.0 17.0 52.0 59.0 0.0 48.0 31.0 34.0 55.0 45.0 59.0 62.0 59.0 45.0 41.0 52.0 59.0 48.0 0.0 41.0 45.0 48.0 31.0 59.0 66.0 62.0 24.0 31.0 55.0 55.0 31.0 41.0 0.0 28.0 45.0 31.0 62.0 66.0 52.0 31.0 34.0 55.0 55.0 34.0 45.0 28.0 0.0 #Sequence identities difference matrix of global PDB chains (%) 0.0 87.0 86.0 84.0 83.0 79.0 86.0 79.0 80.0 84.0 81.0 80.0 83.0 87.0 0.0 83.0 91.0 86.0 86.0 83.0 85.0 87.0 88.0 89.0 90.0 87.0 86.0 83.0 0.0 90.0 86.0 87.0 83.0 84.0 84.0 87.0 87.0 87.0 84.0 84.0 91.0 90.0 0.0 87.0 82.0 90.0 86.0 85.0 86.0 87.0 84.0 87.0 83.0 86.0 86.0 87.0 0.0 85.0 85.0 82.0 85.0 82.0 85.0 86.0 82.0 79.0 86.0 87.0 82.0 85.0 0.0 87.0 83.0 83.0 84.0 84.0 82.0 83.0 86.0 83.0 83.0 90.0 85.0 87.0 0.0 86.0 85.0 83.0 84.0 88.0 85.0 79.0 85.0 84.0 86.0 82.0 83.0 86.0 0.0 85.0 84.0 84.0 84.0 82.0 80.0 87.0 84.0 85.0 85.0 83.0 85.0 85.0 0.0 85.0 80.0 83.0 82.0 84.0 88.0 87.0 86.0 82.0 84.0 83.0 84.0 85.0 0.0 84.0 85.0 84.0 81.0 89.0 87.0 87.0 85.0 84.0 84.0 84.0 80.0 84.0 0.0 83.0 85.0 80.0 90.0 87.0 84.0 86.0 82.0 88.0 84.0 83.0 85.0 83.0 0.0 86.0 83.0 87.0 84.0 87.0 82.0 83.0 85.0 82.0 82.0 84.0 85.0 86.0 0.0 #FASTA SCORE matrix of loop sequence - -1 6 - 7 1 - 2 4 - 3 5 -2 - - -2 9 5 6 4 6 -3 12 -3 - -4 - - - -2 2 -1 -1 - -1 -1 2 3 -4 - - - - 6 6 -1 7 -2 7 -3 - -4 - - - - - 7 -2 8 5 6 1 1 -2 - - - - - - -3 7 -1 5 -1 15 -4 - - - - - - - -2 -2 8 5 -1 -3 - - - - - - - - - 6 2 1 -2 - - - - - - - - - -2 1 -2 -2 - - - - - - - - - - -2 -1 -3 - - - - - - - - - - - 1 -2 - - - - - - - - - - - - -4 - - - - - - - - - - - - - #FASTA SCORE matrix of motif sequence - -2 -7 -8 14 -4 14 - -17 5 -9 12 15 - - 12 3 5 14 11 3 -18 9 -9 10 -4 - - - 26 1 -13 -6 1 -15 2 7 - -8 - - - - 18 -10 -3 14 -22 13 -6 -8 -12 - - - - - - 4 -5 -18 4 -3 -3 11 - - - - - - 6 - -11 5 -7 15 -4 - - - - - - - 2 -21 33 11 7 -3 - - - - - - - - -18 12 3 1 -7 - - - - - - - - - -16 -9 -9 -5 - - - - - - - - - - -8 4 -4 - - - - - - - - - - - -3 -13 - - - - - - - - - - - - -3 - - - - - - - - - - - - - #FASTA SCORE matrix of global PDB chain sequence - -314 -251 -469 -116 -82 -272 -49 -62 -43 -62 -91 -118 - - -32 -918 -188 -351 -48 -243 -300 -297 -250 -500 -186 - - - -862 -198 -336 -44 -200 -229 -268 -230 -446 -162 - - - - -626 -368 -869 -502 -462 -445 -550 -302 -620 - - - - - -138 -122 -127 -151 -112 -121 -279 -88 - - - - - - -345 -137 -73 -66 -112 -65 -198 - - - - - - - -203 -280 -193 -198 -444 -180 - - - - - - - - -54 -52 -65 -142 -112 - - - - - - - - - -98 -72 -140 -104 - - - - - - - - - - -86 -165 -140 - - - - - - - - - - - -174 -139 - - - - - - - - - - - - -240 - - - - - - - - - - - - -