#Head information NAME 2bb1 TYPE beta-beta REPRESENTATIVE 1try_23 MEMBERS 9 CLUSTER 1 #Loop element > 1try_23 ........gpwcggsllnANtvlt 2bb1_0.pdb 0 >1tpa-E_23 .........hfcggslinSQwvvs 2bb1_1.pdb 0 >1trn-A_23 .........hfcggslinEQwvvs 2bb1_2.pdb 0 >1trm-B_23 .........hfcggslinDQwvvs 2bb1_3.pdb 0 >5est-E_26 .......wahtcggtlirQNwvmt 2bb1_4.pdb 0 >1dit-H_25 ........ellcgaslisDRwvlt 2bb1_5.pdb 0 > 1sgt_22 ...........cggalyaQDivlt 2bb1_6.pdb 0 >1gct-A_35 .........hfcggslinENwvvt 2bb1_7.pdb 0 >1ppg-E_23 ........ghfcgatliaPNfvms 2bb1_8.pdb 0 #Motif sequence ........GPWCGGSLLNANTVLT .........HFCGGSLINSQWVVS .........HFCGGSLINEQWVVS .........HFCGGSLINDQWVVS .......WAHTCGGTLIRQNWVMT ........ELLCGASLISDRWVLT ...........CGGALYAQDIVLT .........HFCGGSLINENWVVT ........GHFCGATLIAPNFVMS #Loop sequence AN SQ EQ DQ QN DR QD EN PN #Fingerprint D N : : E : : : Q Q : : A : P D S R #Geometry parameters DISTANCE 4.95 ( 0.09) Vector1 ( -0.54 -0.58 0.62) Vector2 ( 0.25 -0.15 -0.96) Vector3 ( 0.98 -0.01 -0.19) Struc diversity(A) ( 1.8 1.6) #RMSD matrix of conformation of loops (A) 0.00 0.19 0.55 0.43 0.42 0.39 1.38 0.49 0.53 0.19 0.00 0.43 0.28 0.26 0.41 1.29 0.44 0.40 0.55 0.43 0.00 0.23 0.28 0.47 1.26 0.58 0.26 0.43 0.28 0.23 0.00 0.18 0.51 1.18 0.57 0.26 0.42 0.26 0.28 0.18 0.00 0.52 1.11 0.49 0.15 0.39 0.41 0.47 0.51 0.52 0.00 1.61 0.42 0.59 1.38 1.29 1.26 1.18 1.11 1.61 0.00 1.49 1.05 0.49 0.44 0.58 0.57 0.49 0.42 1.49 0.00 0.57 0.53 0.40 0.26 0.26 0.15 0.59 1.05 0.57 0.00 #Sequence identities difference matrix of loop (%) 0.0100.0100.0100.0 50.0100.0100.0 50.0 50.0 100.0 0.0 50.0 50.0100.0100.0100.0100.0100.0 100.0 50.0 0.0 50.0100.0100.0100.0 50.0100.0 100.0 50.0 50.0 0.0100.0 50.0100.0100.0100.0 50.0100.0100.0100.0 0.0100.0 50.0 50.0 50.0 100.0100.0100.0 50.0100.0 0.0100.0100.0100.0 100.0100.0100.0100.0 50.0100.0 0.0100.0100.0 50.0100.0 50.0100.0 50.0100.0100.0 0.0 50.0 50.0100.0100.0100.0 50.0100.0100.0 50.0 0.0 #Sequence identities difference matrix of motif (%) 0.0 38.0 38.0 38.0 42.0 38.0 38.0 29.0 42.0 38.0 0.0 4.0 4.0 38.0 38.0 42.0 12.0 33.0 38.0 4.0 0.0 4.0 38.0 38.0 42.0 8.0 33.0 38.0 4.0 4.0 0.0 38.0 33.0 42.0 12.0 33.0 42.0 38.0 38.0 38.0 0.0 42.0 42.0 29.0 33.0 38.0 38.0 38.0 33.0 42.0 0.0 42.0 33.0 42.0 38.0 42.0 42.0 42.0 42.0 42.0 0.0 38.0 46.0 29.0 12.0 8.0 12.0 29.0 33.0 38.0 0.0 33.0 42.0 33.0 33.0 33.0 33.0 42.0 46.0 33.0 0.0 #Sequence identities difference matrix of global PDB chains (%) 0.0 59.0 64.0 62.0 70.0 66.0 59.0 65.0 69.0 59.0 0.0 25.0 26.0 62.0 65.0 66.0 60.0 67.0 64.0 25.0 0.0 21.0 61.0 66.0 69.0 60.0 66.0 62.0 26.0 21.0 0.0 61.0 65.0 70.0 59.0 66.0 70.0 62.0 61.0 61.0 0.0 70.0 69.0 64.0 61.0 66.0 65.0 66.0 65.0 70.0 0.0 70.0 68.0 75.0 59.0 66.0 69.0 70.0 69.0 70.0 0.0 70.0 72.0 65.0 60.0 60.0 59.0 64.0 68.0 70.0 0.0 71.0 69.0 67.0 66.0 66.0 61.0 75.0 72.0 71.0 0.0 #FASTA SCORE matrix of loop sequence - 1 -1 -2 6 -3 1 6 6 - - 6 7 - 1 - -1 -1 - - - 9 2 3 2 6 -1 - - - - - 9 - 2 -1 - - - - - -1 9 9 6 - - - - - - -2 1 -2 - - - - - - - 4 1 - - - - - - - - 6 - - - - - - - - - #FASTA SCORE matrix of motif sequence - 53 51 50 48 34 48 61 50 - - 105 106 71 59 38 95 61 - - - 108 73 61 40 102 61 - - - - 71 67 38 98 61 - - - - - 54 50 83 63 - - - - - - 37 62 43 - - - - - - - 45 41 - - - - - - - - 65 - - - - - - - - - #FASTA SCORE matrix of global PDB chain sequence - 524 474 454 333 344 535 392 279 - - 1188 1195 511 446 409 561 365 - - - 1254 507 453 343 552 368 - - - - 522 440 377 563 368 - - - - - 331 316 525 480 - - - - - - 307 387 189 - - - - - - - 317 185 - - - - - - - - 339 - - - - - - - - -