#Head information NAME 3aa0 TYPE alpha-alpha REPRESENTATIVE 1pdn-C_35 MEMBERS 13 CLUSTER 1 #Loop element >1pdn-C_35 .......pcvisrqlRVShgcvskilnryqet........ 3aa0_0.pdb 0 > 3wrp_61 .......qrelknelGAGiatitrgsnslk.......... 3aa0_1.pdb 0 > 1enh_28 ......rrqqlsselGLNeaqikiwfqnkrak........ 3aa0_2.pdb 0 >1fjl-A_31 ......treelaqrtNLTeariqvwfqnrrarl....... 3aa0_3.pdb 0 > 1bia_22 .......geqlgetlGMSraainkhiqtlrd......... 3aa0_4.pdb 0 >1ber-A_161 .......rqeigqivGCSretvgrilkmled......... 3aa0_5.pdb 0 >1fip-A_49 .......qtraalmmGINrgtlrkklkk............ 3aa0_6.pdb 0 > 1arv_94 ......alravginhGVSfgdliqfatavgms........ 3aa0_7.pdb 0 > 2tct_26 .......trklaqklGIEqptlywh............... 3aa0_8.pdb 0 > 1r69_17 .......qaelaqkvGTTqqsieqle.............. 3aa0_9.pdb 0 > 2cro_19 .......qtelatkaGVKqqsiqlie.............. 3aa0_10.pdb 0 >1lmb-3_28 .......qesvadkmGMGqsgvgalf.............. 3aa0_11.pdb 0 > 1llp_87 ldevvamqkpfvqkhGVTpgdfiafagavals........ 3aa0_12.pdb 0 #Motif sequence .......PCVISRQLRVSHGCVSKILNRYQET........ .......QRELKNELGAGIATITRGSNSLK.......... ......RRQQLSSELGLNEAQIKIWFQNKRAK........ ......TREELAQRTNLTEARIQVWFQNRRARL....... .......GEQLGETLGMSRAAINKHIQTLRD......... .......RQEIGQIVGCSRETVGRILKMLED......... .......QTRAALMMGINRGTLRKKLKK............ ......ALRAVGINHGVSFGDLIQFATAVGMS........ .......TRKLAQKLGIEQPTLYWH............... .......QAELAQKVGTTQQSIEQLE.............. .......QTELATKAGVKQQSIQLIE.............. .......QESVADKMGMGQSGVGALF.............. LDEVVAMQKPFVQKHGVTPGDFIAFAGAVALS........ #Loop sequence RVS GAG GLN NLT GMS GCS GIN GVS GIE GTT GVK GMG GVT #Fingerprint G V S : : : : : : : : : : I T : : : : L : : : G : M : : : N : A : N C E R T K #Geometry parameters DISTANCE 7.76 ( 0.13) Vector1 ( 0.89 -0.35 -0.28) Vector2 ( -0.79 -0.28 -0.54) Vector3 ( -0.51 0.84 -0.20) Struc diversity(A) ( 0.9 1.8 2.5) #RMSD matrix of conformation of loops (A) 0.00 0.40 0.53 0.61 1.39 1.10 0.63 0.33 1.12 1.01 0.78 1.46 0.54 0.40 0.00 0.46 0.52 1.18 1.06 0.63 0.61 0.99 0.91 0.77 1.32 0.82 0.53 0.46 0.00 0.28 1.01 0.72 0.22 0.54 0.78 0.70 0.64 1.06 0.77 0.61 0.52 0.28 0.00 0.98 0.64 0.40 0.70 0.68 0.64 0.63 0.96 0.90 1.39 1.18 1.01 0.98 0.00 0.82 0.97 1.44 0.53 0.68 1.03 0.82 1.57 1.10 1.06 0.72 0.64 0.82 0.00 0.69 1.12 0.40 0.49 0.72 0.56 1.30 0.63 0.63 0.22 0.40 0.97 0.69 0.00 0.58 0.78 0.72 0.70 1.07 0.77 0.33 0.61 0.54 0.70 1.44 1.12 0.58 0.00 1.19 1.07 0.82 1.53 0.31 1.12 0.99 0.78 0.68 0.53 0.40 0.78 1.19 0.00 0.33 0.69 0.61 1.35 1.01 0.91 0.70 0.64 0.68 0.49 0.72 1.07 0.33 0.00 0.40 0.67 1.23 0.78 0.77 0.64 0.63 1.03 0.72 0.70 0.82 0.69 0.40 0.00 0.97 0.98 1.46 1.32 1.06 0.96 0.82 0.56 1.07 1.53 0.61 0.67 0.97 0.00 1.74 0.54 0.82 0.77 0.90 1.57 1.30 0.77 0.31 1.35 1.23 0.98 1.74 0.00 #Sequence identities difference matrix of loop (%) 0.0100.0100.0100.0 67.0 67.0100.0 33.0100.0100.0 67.0100.0 67.0 100.0 0.0 67.0100.0 67.0 67.0 67.0 67.0 67.0 67.0 67.0 33.0 67.0 100.0 67.0 0.0 67.0 67.0 67.0 33.0 67.0 67.0 67.0 67.0 67.0 67.0 100.0100.0 67.0 0.0100.0100.0100.0100.0100.0 67.0100.0100.0 67.0 67.0 67.0 67.0100.0 0.0 33.0 67.0 33.0 67.0 67.0 67.0 33.0 67.0 67.0 67.0 67.0100.0 33.0 0.0 67.0 33.0 67.0 67.0 67.0 67.0 67.0 100.0 67.0 33.0100.0 67.0 67.0 0.0 67.0 33.0 67.0 67.0 67.0 67.0 33.0 67.0 67.0100.0 33.0 33.0 67.0 0.0 67.0 67.0 33.0 67.0 33.0 100.0 67.0 67.0100.0 67.0 67.0 33.0 67.0 0.0 67.0 67.0 67.0 67.0 100.0 67.0 67.0 67.0 67.0 67.0 67.0 67.0 67.0 0.0 67.0 67.0 33.0 67.0 67.0 67.0100.0 67.0 67.0 67.0 33.0 67.0 67.0 0.0 67.0 33.0 100.0 33.0 67.0100.0 33.0 67.0 67.0 67.0 67.0 67.0 67.0 0.0 67.0 67.0 67.0 67.0 67.0 67.0 67.0 67.0 33.0 67.0 33.0 33.0 67.0 0.0 #Sequence identities difference matrix of motif (%) 0.0 57.0 60.0 68.0 55.0 50.0 55.0 57.0 60.0 62.0 57.0 60.0 75.0 57.0 0.0 50.0 57.0 45.0 47.0 50.0 60.0 45.0 45.0 45.0 50.0 75.0 60.0 50.0 0.0 38.0 45.0 57.0 60.0 59.0 57.0 57.0 57.0 60.0 71.0 68.0 57.0 38.0 0.0 52.0 60.0 65.0 68.0 60.0 52.0 55.0 60.0 77.0 55.0 45.0 45.0 52.0 0.0 45.0 52.0 57.0 50.0 52.0 52.0 52.0 77.0 50.0 47.0 57.0 60.0 45.0 0.0 47.0 57.0 52.0 50.0 52.0 52.0 75.0 55.0 50.0 60.0 65.0 52.0 47.0 0.0 57.0 40.0 45.0 43.0 43.0 73.0 57.0 60.0 59.0 68.0 57.0 57.0 57.0 0.0 57.0 60.0 60.0 60.0 52.0 60.0 45.0 57.0 60.0 50.0 52.0 40.0 57.0 0.0 32.0 35.0 38.0 73.0 62.0 45.0 57.0 52.0 52.0 50.0 45.0 60.0 32.0 0.0 20.0 32.0 68.0 57.0 45.0 57.0 55.0 52.0 52.0 43.0 60.0 35.0 20.0 0.0 35.0 70.0 60.0 50.0 60.0 60.0 52.0 52.0 43.0 60.0 38.0 32.0 35.0 0.0 70.0 75.0 75.0 71.0 77.0 77.0 75.0 73.0 52.0 73.0 68.0 70.0 70.0 0.0 #Sequence identities difference matrix of global PDB chains (%) 0.0 84.0 88.0 84.0 86.0 86.0 83.0 88.0 85.0 87.0 82.0 84.0 89.0 84.0 0.0 83.0 80.0 85.0 89.0 77.0 90.0 82.0 86.0 85.0 81.0 92.0 88.0 83.0 0.0 72.0 94.0 89.0 87.0 94.0 92.0 84.0 82.0 88.0 94.0 84.0 80.0 72.0 0.0 90.0 90.0 85.0 90.0 87.0 84.0 77.0 88.0 92.0 86.0 85.0 94.0 90.0 0.0 83.0 89.0 85.0 81.0 92.0 91.0 89.0 82.0 86.0 89.0 89.0 90.0 83.0 0.0 86.0 85.0 81.0 89.0 89.0 86.0 85.0 83.0 77.0 87.0 85.0 89.0 86.0 0.0 91.0 86.0 83.0 82.0 85.0 90.0 88.0 90.0 94.0 90.0 85.0 85.0 91.0 0.0 82.0 92.0 93.0 90.0 58.0 85.0 82.0 92.0 87.0 81.0 81.0 86.0 82.0 0.0 87.0 88.0 88.0 85.0 87.0 86.0 84.0 84.0 92.0 89.0 83.0 92.0 87.0 0.0 54.0 76.0 94.0 82.0 85.0 82.0 77.0 91.0 89.0 82.0 93.0 88.0 54.0 0.0 87.0 93.0 84.0 81.0 88.0 88.0 89.0 86.0 85.0 90.0 88.0 76.0 87.0 0.0 92.0 89.0 92.0 94.0 92.0 82.0 85.0 90.0 58.0 85.0 94.0 93.0 92.0 0.0 #FASTA SCORE matrix of loop sequence - -3 -1 2 3 1 2 7 - -1 2 -2 4 - - 6 -4 7 7 7 8 4 6 6 15 6 - - - 5 12 7 17 10 10 7 9 11 9 - - - - 5 - 2 3 1 4 - 1 6 - - - - - 11 11 14 9 9 9 15 11 - - - - - - 7 12 5 9 7 6 9 - - - - - - - 13 13 7 12 10 12 - - - - - - - - 11 10 13 9 15 - - - - - - - - - 6 13 7 11 - - - - - - - - - - 7 5 13 - - - - - - - - - - - 7 12 - - - - - - - - - - - - 7 - - - - - - - - - - - - - #FASTA SCORE matrix of motif sequence - 1 -5 -11 10 11 15 -8 -7 3 - 5 -15 - - 22 2 28 18 7 3 17 21 15 16 2 - - - 98 38 11 16 -18 18 16 22 28 -9 - - - - 26 10 -1 -27 15 29 25 23 -4 - - - - - 49 23 -2 27 16 4 26 -14 - - - - - - 23 -8 9 32 17 22 -16 - - - - - - - 6 21 13 18 15 -2 - - - - - - - - 6 -2 -3 -3 62 - - - - - - - - - 32 28 17 15 - - - - - - - - - - 67 32 20 - - - - - - - - - - - 28 12 - - - - - - - - - - - - 14 - - - - - - - - - - - - - #FASTA SCORE matrix of global PDB chain sequence - -65 -132 -96 -278 -123 -69 -321 -119 -86 -96 -55 -324 - - -70 -47 -325 -164 2 -393 -136 -63 -67 -19 -413 - - - 86 -478 -267 -82 -542 -276 -31 -17 -49 -547 - - - - -401 -211 -17 -464 -214 -13 -8 -25 -461 - - - - - -133 -337 -138 -134 -431 -425 -371 -130 - - - - - - -144 -224 -21 -224 -256 -183 -192 - - - - - - - -442 -164 -32 -35 -34 -429 - - - - - - - - -212 -495 -506 -454 961 - - - - - - - - - -215 -218 -177 -222 - - - - - - - - - - 181 16 -498 - - - - - - - - - - - -17 -500 - - - - - - - - - - - - -449 - - - - - - - - - - - - -