#Head information
NAME            3aa2
TYPE            alpha-alpha
REPRESENTATIVE  1cdg_300
MEMBERS         6
CLUSTER         2

#Loop element
>  1cdg_300    myglkamlegsaadYAQvdd  3aa2_0.pdb 	0
>  1cgu_300    myaldsminstatdYNQvnd  3aa2_1.pdb 	0
>  1cyg_296    wygfnqmiqdtasaYDEvld  3aa2_2.pdb 	0
>  2aaa_269    isnlynmiksvasdCSDptl  3aa2_3.pdb 	0
>  1ciu_301    mygldsmiqstasdYNFind  3aa2_4.pdb 	0
>  1ctn_400    ......gvnallaqGVKpgk  3aa2_5.pdb 	1

#Motif sequence
MYGLKAMLEGSAADYAQVDD
MYALDSMINSTATDYNQVND
WYGFNQMIQDTASAYDEVLD
ISNLYNMIKSVASDCSDPTL
MYGLDSMIQSTASDYNFIND
......GVNALLAQGVKPGK

#Loop sequence
YAQ
YNQ
YDE
CSD
YNF
GVK

#Fingerprint
Y N Q 
: : : 
: A D 
: D E 
C S F 
G V K 

#Geometry parameters
DISTANCE                 6.63 ( 0.56)
Vector1                 (    0.25   -0.85    0.46)
Vector2                 (   -0.84   -0.54    0.11)
Vector3                 (   -0.69   -0.61   -0.39)
Struc diversity(A)      (  3.3  3.8  1.4)

#RMSD matrix of conformation of loops (A)
 0.00 0.38 0.51 0.60 0.32 2.86
 0.38 0.00 0.60 0.71 0.48 2.87
 0.51 0.60 0.00 0.59 0.39 2.92
 0.60 0.71 0.59 0.00 0.70 2.68
 0.32 0.48 0.39 0.70 0.00 2.88
 2.86 2.87 2.92 2.68 2.88 0.00

#Sequence identities difference matrix of loop (%)
  0.0 33.0 67.0100.0 67.0100.0
 33.0  0.0 67.0100.0 33.0100.0
 67.0 67.0  0.0100.0 67.0100.0
100.0100.0100.0  0.0100.0100.0
 67.0 33.0 67.0100.0  0.0100.0
100.0100.0100.0100.0100.0  0.0

#Sequence identities difference matrix of motif (%)
  0.0 50.0 65.0 80.0 55.0 95.0
 50.0  0.0 60.0 70.0 25.0 95.0
 65.0 60.0  0.0 80.0 50.0100.0
 80.0 70.0 80.0  0.0 65.0 95.0
 55.0 25.0 50.0 65.0  0.0100.0
 95.0 95.0100.0 95.0100.0  0.0

#Sequence identities difference matrix of global PDB chains (%)
  0.0 26.0 35.0 79.0 30.0 81.0
 26.0  0.0 38.0 79.0 30.0 82.0
 35.0 38.0  0.0 79.0 31.0 81.0
 79.0 79.0 79.0  0.0 78.0 81.0
 30.0 30.0 31.0 78.0  0.0 82.0
 81.0 82.0 81.0 81.0 82.0  0.0

#FASTA SCORE matrix of loop sequence
    -   14    8   -2    3   -1
    -    -   12   -2   11   -4
    -    -    -   -1    7   -6
    -    -    -    -   -7   -6
    -    -    -    -    -  -10
    -    -    -    -    -    -

#FASTA SCORE matrix of motif sequence
    -   73   48   14   72   -8
    -    -   53   25  100   -2
    -    -    -    7   65  -18
    -    -    -    -   26    1
    -    -    -    -    -  -14
    -    -    -    -    -    -

#FASTA SCORE matrix of global PDB chain sequence
    - 3561 3132  217 3344 -105
    -    - 3015  203 3295 -130
    -    -    -  191 3314  -88
    -    -    -    -  237  -70
    -    -    -    -    - -119
    -    -    -    -    -    -