#Head information NAME 3ab2 TYPE alpha-beta REPRESENTATIVE 2nad-A_227 MEMBERS 6 CLUSTER 1 #Loop element >2nad-A_227 ...................esvekeLNLtw......... 3ab2_0.pdb 0 > 3grs_97 ..................yqnnltkSHIeiir....... 3ab2_1.pdb 0 > 1lvl_102 ..................vaallkkHGVkvv........ 3ab2_2.pdb 0 >1ges-B_80 wetliasrtayidrihtsyenvlgkNNVdvik....... 3ab2_3.pdb 0 > 1trb_61 ...........gpllmermhehatkFETeii........ 3ab2_4.pdb 0 >3lad-B_87 vptmiarkdqivrnltggvaslikaNGVtlfe....... 3ab2_5.pdb 0 #Motif sequence ...................ESVEKELNLTW......... ..................YQNNLTKSHIEIIR....... ..................VAALLKKHGVKVV........ WETLIASRTAYIDRIHTSYENVLGKNNVDVIK....... ...........GPLLMERMHEHATKFETEII........ VPTMIARKDQIVRNLTGGVASLIKANGVTLFE....... #Loop sequence LNL SHI HGV NNV FET NGV #Fingerprint N G V : : : F N : H : I L E L S H T #Geometry parameters DISTANCE 7.10 ( 0.22) Vector1 ( 0.02 -0.08 1.00) Vector2 ( 0.19 0.55 -0.81) Vector3 ( -0.84 0.27 -0.47) Struc diversity(A) ( 0.9 1.4 1.3) #RMSD matrix of conformation of loops (A) 0.00 0.97 1.02 0.80 1.01 1.21 0.97 0.00 0.48 0.22 0.52 0.47 1.02 0.48 0.00 0.40 0.65 0.40 0.80 0.22 0.40 0.00 0.53 0.48 1.01 0.52 0.65 0.53 0.00 0.65 1.21 0.47 0.40 0.48 0.65 0.00 #Sequence identities difference matrix of loop (%) 0.0100.0100.0 67.0100.0100.0 100.0 0.0100.0100.0100.0100.0 100.0100.0 0.0 67.0100.0 33.0 67.0100.0 67.0 0.0100.0 33.0 100.0100.0100.0100.0 0.0100.0 100.0100.0 33.0 33.0100.0 0.0 #Sequence identities difference matrix of motif (%) 0.0 36.0 31.0 74.0 51.0 74.0 36.0 0.0 31.0 69.0 41.0 82.0 31.0 31.0 0.0 72.0 49.0 67.0 74.0 69.0 72.0 0.0 77.0 69.0 51.0 41.0 49.0 77.0 0.0 79.0 74.0 82.0 67.0 69.0 79.0 0.0 #Sequence identities difference matrix of global PDB chains (%) 0.0 81.0 79.0 81.0 80.0 83.0 81.0 0.0 74.0 48.0 82.0 74.0 79.0 74.0 0.0 70.0 81.0 59.0 81.0 48.0 70.0 0.0 81.0 72.0 80.0 82.0 81.0 81.0 0.0 81.0 83.0 74.0 59.0 72.0 81.0 0.0 #FASTA SCORE matrix of loop sequence - - -2 4 - -3 - - 1 6 -4 3 - - - 6 -4 14 - - - - -4 12 - - - - - -7 - - - - - - #FASTA SCORE matrix of motif sequence - -7 -1 8 -10 6 - - 13 43 23 -1 - - - 21 3 36 - - - - -4 24 - - - - - -27 - - - - - - #FASTA SCORE matrix of global PDB chain sequence - -130 -91 -98 -60 -113 - - 513 1534 -60 580 - - - 655 -30 1027 - - - - -29 658 - - - - - -101 - - - - - -