#Head information NAME 3ab4 TYPE alpha-beta REPRESENTATIVE 2ohx-A_306 MEMBERS 5 CLUSTER 1 #Loop element >2ohx-A_306 .......mlllSGRtwkg.... 3ab4_0.pdb 0 >1deh-A_306 .......mlllTGRtwkg.... 3ab4_1.pdb 0 >1cdo-A_305 ......piqliAGRtwkg.... 3ab4_2.pdb 0 > 4fxn_101 ......ermngYGCvv...... 3ab4_3.pdb 0 > 1rcf_107 ......ekisqRGGkt...... 3ab4_4.pdb 0 #Motif sequence .......MLLLSGRTWKG.... .......MLLLTGRTWKG.... ......PIQLIAGRTWKG.... ......ERMNGYGCVV...... ......EKISQRGGKT...... #Loop sequence SGR TGR AGR YGC RGG #Fingerprint A G R R : : S : : T : C Y : G #Geometry parameters DISTANCE 6.85 ( 0.12) Vector1 ( 0.99 0.06 -0.14) Vector2 ( 0.04 0.22 0.97) Vector3 ( 0.33 0.38 0.86) Struc diversity(A) ( 1.1 1.0 0.9) #RMSD matrix of conformation of loops (A) 0.00 0.28 0.54 0.57 0.76 0.28 0.00 0.79 0.73 0.97 0.54 0.79 0.00 0.46 0.41 0.57 0.73 0.46 0.00 0.61 0.76 0.97 0.41 0.61 0.00 #Sequence identities difference matrix of loop (%) 0.0 33.0 33.0 67.0 67.0 33.0 0.0 33.0 67.0 67.0 33.0 33.0 0.0 67.0 67.0 67.0 67.0 67.0 0.0 67.0 67.0 67.0 67.0 67.0 0.0 #Sequence identities difference matrix of motif (%) 0.0 5.0 23.0 50.0 50.0 5.0 0.0 23.0 50.0 50.0 23.0 23.0 0.0 50.0 48.0 50.0 50.0 50.0 0.0 36.0 50.0 50.0 48.0 36.0 0.0 #Sequence identities difference matrix of global PDB chains (%) 0.0 13.0 45.0 86.0 86.0 13.0 0.0 45.0 86.0 87.0 45.0 45.0 0.0 89.0 84.0 86.0 86.0 89.0 0.0 76.0 86.0 87.0 84.0 76.0 0.0 #FASTA SCORE matrix of loop sequence - 17 16 2 4 - - 15 2 4 - - - 2 3 - - - - 4 - - - - - #FASTA SCORE matrix of motif sequence - 73 57 -8 -5 - - 56 -8 -5 - - - -14 -10 - - - - 11 - - - - - #FASTA SCORE matrix of global PDB chain sequence - 2237 1459 -358 -324 - - 1458 -363 -317 - - - -357 -313 - - - - 56 - - - - -