#Head information NAME 3ba0 TYPE beta-alpha REPRESENTATIVE 1ldm_22 MEMBERS 9 CLUSTER 1 #Loop element > 1ldm_22 ....kitvvGVGavgmacaisilm..... 3ba0_0.pdb 0 >1lth-R_3 ....klaviGAGavgstlafaaaqr.... 3ba0_1.pdb 0 >1hyh-A_3 ....kigiiGLGnvgaavahgliaq.... 3ba0_2.pdb 0 > 2pgd_5 .....ialiGLAvmgqnlilnmnd..... 3ba0_3.pdb 0 >2nad-A_193 ....hvgtvAAGriglavlrrla...... 3ba0_4.pdb 0 > 1nhq_2 ....kvivlGSShggyeaveellnl.... 3ba0_5.pdb 0 > 3cox_7 ..rvpalviGSGyggavaalrltq..... 3ba0_6.pdb 0 > 3grs_6 .....ylviGGGsgglasarraae..... 3ba0_7.pdb 0 >1gdh-A_148 ....tlgiyGFGsigqalakraq...... 3ba0_8.pdb 0 #Motif sequence ....KITVVGVGAVGMACAISILM..... ....KLAVIGAGAVGSTLAFAAAQR.... ....KIGIIGLGNVGAAVAHGLIAQ.... .....IALIGLAVMGQNLILNMND..... ....HVGTVAAGRIGLAVLRRLA...... ....KVIVLGSSHGGYEAVEELLNL.... ..RVPALVIGSGYGGAVAALRLTQ..... .....YLVIGGGSGGLASARRAAE..... ....TLGIYGFGSIGQALAKRAQ...... #Loop sequence GVG GAG GLG GLA AAG GSS GSG GGG GFG #Fingerprint G A G : : : : L : : : : : S : : : : : F : : G A A V S #Geometry parameters DISTANCE 7.91 ( 0.24) Vector1 ( 0.29 0.92 -0.26) Vector2 ( -0.30 -0.96 -0.02) Vector3 ( 0.02 0.24 -0.97) Struc diversity(A) ( 1.9 2.1 1.4) #RMSD matrix of conformation of loops (A) 0.00 0.64 0.50 0.89 0.67 0.97 0.78 0.60 0.86 0.64 0.00 0.58 1.19 0.60 1.07 0.79 0.64 1.20 0.50 0.58 0.00 1.04 0.44 1.09 0.79 0.66 0.84 0.89 1.19 1.04 0.00 1.19 1.41 1.28 1.15 1.06 0.67 0.60 0.44 1.19 0.00 1.26 0.79 0.79 0.93 0.97 1.07 1.09 1.41 1.26 0.00 0.64 0.55 1.76 0.78 0.79 0.79 1.28 0.79 0.64 0.00 0.31 1.45 0.60 0.64 0.66 1.15 0.79 0.55 0.31 0.00 1.34 0.86 1.20 0.84 1.06 0.93 1.76 1.45 1.34 0.00 #Sequence identities difference matrix of loop (%) 0.0 33.0 33.0 67.0 67.0 67.0 33.0 33.0 33.0 33.0 0.0 33.0 67.0 33.0 67.0 33.0 33.0 33.0 33.0 33.0 0.0 33.0 67.0 67.0 33.0 33.0 33.0 67.0 67.0 33.0 0.0100.0 67.0 67.0 67.0 67.0 67.0 33.0 67.0100.0 0.0100.0 67.0 67.0 67.0 67.0 67.0 67.0 67.0100.0 0.0 33.0 67.0 67.0 33.0 33.0 33.0 67.0 67.0 33.0 0.0 33.0 33.0 33.0 33.0 33.0 67.0 67.0 67.0 33.0 0.0 33.0 33.0 33.0 33.0 67.0 67.0 67.0 33.0 33.0 0.0 #Sequence identities difference matrix of motif (%) 0.0 45.0 45.0 59.0 55.0 55.0 59.0 48.0 52.0 45.0 0.0 48.0 55.0 59.0 59.0 55.0 45.0 48.0 45.0 48.0 0.0 55.0 52.0 59.0 55.0 52.0 48.0 59.0 55.0 55.0 0.0 66.0 66.0 62.0 55.0 55.0 55.0 59.0 52.0 66.0 0.0 62.0 62.0 45.0 45.0 55.0 59.0 59.0 66.0 62.0 0.0 55.0 59.0 66.0 59.0 55.0 55.0 62.0 62.0 55.0 0.0 45.0 59.0 48.0 45.0 52.0 55.0 45.0 59.0 45.0 0.0 41.0 52.0 48.0 48.0 55.0 45.0 66.0 59.0 41.0 0.0 #Sequence identities difference matrix of global PDB chains (%) 0.0 62.0 76.0 83.0 83.0 83.0 84.0 83.0 81.0 62.0 0.0 74.0 83.0 82.0 86.0 83.0 82.0 83.0 76.0 74.0 0.0 83.0 84.0 81.0 83.0 84.0 82.0 83.0 83.0 83.0 0.0 83.0 82.0 82.0 82.0 83.0 83.0 82.0 84.0 83.0 0.0 83.0 84.0 81.0 75.0 83.0 86.0 81.0 82.0 83.0 0.0 82.0 81.0 83.0 84.0 83.0 83.0 82.0 84.0 82.0 0.0 80.0 84.0 83.0 82.0 84.0 82.0 81.0 81.0 80.0 0.0 82.0 81.0 83.0 82.0 83.0 75.0 83.0 84.0 82.0 0.0 #FASTA SCORE matrix of loop sequence - 16 17 9 8 6 14 12 15 - - 14 6 13 9 17 16 13 - - - 13 6 5 13 12 17 - - - - -2 6 5 4 9 - - - - - 1 9 8 5 - - - - - - 13 8 5 - - - - - - - 16 13 - - - - - - - - 12 - - - - - - - - - #FASTA SCORE matrix of motif sequence - 50 53 21 25 21 27 26 31 - - 46 30 22 8 32 34 41 - - - 24 39 20 25 20 45 - - - - 10 12 12 -1 25 - - - - - 9 15 33 31 - - - - - - 40 26 - - - - - - - - 51 14 - - - - - - - - 38 - - - - - - - - - #FASTA SCORE matrix of global PDB chain sequence - 796 351 -177 -102 -147 -254 -181 -83 - - 404 -159 -49 -170 -202 -165 -93 - - - -178 -123 -111 -240 -208 -44 - - - - -92 -81 -108 -108 -207 - - - - - -84 -170 -130 286 - - - - - - -63 37 -191 - - - - - - - -22 -257 - - - - - - - - -186 - - - - - - - - -