#Head information
NAME            4ab1
TYPE            alpha-beta
REPRESENTATIVE  1ldm_106
MEMBERS         7
CLUSTER         3

#Loop element
>  1ldm_106    .rlnlvqrnvnifkfiipnivkhSPDCiilv.  4ab1_0.pdb 	0
>1lth-R_87     .rlelvgatvnilkaimpnlvkvAPNAiyml.  4ab1_1.pdb 	0
>1ldn-G_93     ..ldlvdkniaifrsivesvmasGFQGlflv.  4ab1_2.pdb 	1
>  2cmd_87     .rsdlfnvnagivknlvqqvaktCPKAcigi.  4ab1_3.pdb 	0
>  1esc_154    ....qfervgaeleelldrigyfAPDAkrvlv  4ab1_4.pdb 	2
>  3tgl_107    .fldsygevqnelvatvldqfkqYPSYkvavt  4ab1_5.pdb 	0
>1mld-C_86     .rddlfntnativatltaacaqhCPDAmici.  4ab1_6.pdb 	0

#Motif sequence
.RLNLVQRNVNIFKFIIPNIVKHSPDCIILV.
.RLELVGATVNILKAIMPNLVKVAPNAIYML.
..LDLVDKNIAIFRSIVESVMASGFQGLFLV.
.RSDLFNVNAGIVKNLVQQVAKTCPKACIGI.
....QFERVGAELEELLDRIGYFAPDAKRVLV
.FLDSYGEVQNELVATVLDQFKQYPSYKVAVT
.RDDLFNTNATIVATLTAACAQHCPDAMICI.

#Loop sequence
SPDC
APNA
GFQG
CPKA
APDA
YPSY
CPDA

#Fingerprint
A P D A 
: : : : 
C : : : 
: : K : 
G : N C 
S : Q G 
Y F S Y 

#Geometry parameters
DISTANCE                 8.33 ( 1.03)
Vector1                 (   -0.58   -0.45    0.68)
Vector2                 (    0.27    0.75   -0.60)
Vector3                 (    0.73   -0.48   -0.50)
Struc diversity(A)      (  4.1  3.0  2.7  3.2)

#Key residues
  0.3  0.3  0.1  0.3)
  0.3  0.3  0.1  0.3)

#RMSD matrix of conformation of loops (A)
 0.00 1.01 2.48 0.91 2.03 0.80 1.09
 1.01 0.00 2.51 0.64 2.32 1.09 0.63
 2.48 2.51 0.00 2.35 3.10 2.42 2.43
 0.91 0.64 2.35 0.00 1.91 0.72 0.23
 2.03 2.32 3.10 1.91 0.00 1.62 1.90
 0.80 1.09 2.42 0.72 1.62 0.00 0.83
 1.09 0.63 2.43 0.23 1.90 0.83 0.00

#Sequence identities difference matrix of loop (%)
  0.0 75.0100.0 75.0 50.0 75.0 50.0
 75.0  0.0100.0 50.0 25.0 75.0 50.0
100.0100.0  0.0100.0100.0100.0100.0
 75.0 50.0100.0  0.0 50.0 75.0 25.0
 50.0 25.0100.0 50.0  0.0 75.0 25.0
 75.0 75.0100.0 75.0 75.0  0.0 75.0
 50.0 50.0100.0 25.0 25.0 75.0  0.0

#Sequence identities difference matrix of motif (%)
  0.0 47.0 66.0 69.0 84.0 81.0 69.0
 47.0  0.0 78.0 72.0 71.0 75.0 78.0
 66.0 78.0  0.0 75.0 91.0 81.0 81.0
 69.0 72.0 75.0  0.0 84.0 79.0 44.0
 84.0 71.0 91.0 84.0  0.0 76.0 81.0
 81.0 75.0 81.0 79.0 76.0  0.0 79.0
 69.0 78.0 81.0 44.0 81.0 79.0  0.0

#Sequence identities difference matrix of global PDB chains (%)
  0.0 62.0 66.0 77.0 82.0 83.0 77.0
 62.0  0.0 60.0 73.0 80.0 85.0 75.0
 66.0 60.0  0.0 72.0 82.0 82.0 77.0
 77.0 73.0 72.0  0.0 84.0 82.0 42.0
 82.0 80.0 82.0 84.0  0.0 83.0 79.0
 83.0 85.0 82.0 82.0 83.0  0.0 85.0
 77.0 75.0 77.0 42.0 79.0 85.0  0.0

#FASTA SCORE matrix of loop sequence
    -   12   -7    7   18    5   16
    -    -   -4   14   22    7   16
    -    -    -   -5   -4  -10   -7
    -    -    -    -   13    5   27
    -    -    -    -    -    6   22
    -    -    -    -    -    -    5
    -    -    -    -    -    -    -

#FASTA SCORE matrix of motif sequence
    -   92   60   43    6    3   50
    -    -   39   40   17   15   26
    -    -    -   29  -12  -16   15
    -    -    -    -    9    9   93
    -    -    -    -    -   16   10
    -    -    -    -    -    -    9
    -    -    -    -    -    -    -

#FASTA SCORE matrix of global PDB chain sequence
    -  796  677  152  -87 -128  129
    -    -  763  250  -58  -94  217
    -    -    -  222  -68  -97  187
    -    -    -    -  -62 -112 1088
    -    -    -    -    - -107    7
    -    -    -    -    -    - -105
    -    -    -    -    -    -    -