#Head information NAME 4ab4 TYPE alpha-beta REPRESENTATIVE 3eca-A_226 MEMBERS 8 CLUSTER 1 #Loop element >3eca-A_226 .....lpakalvdAGYDgivsagv 4ab4_0.pdb 0 >3pga-1_209 .....taykalaqNGAKalihagt 4ab4_1.pdb 0 >2ohx-A_202 .gvglsvimgckaAGAAriigv.. 4ab4_2.pdb 0 > 1igs_162 ....endldialrIGARfigin.. 4ab4_3.pdb 0 > 1pii_167 ....eeeqeraiaLGAKvvgin.. 4ab4_4.pdb 0 > 1gox_226 ....aedarlavqHGAAgiiv... 4ab4_5.pdb 0 >1cdo-A_203 .avglaavmgchsAGAKriiav.. 4ab4_6.pdb 0 > 1oyc_170 ikeyvqaaknsiaAGADgveih.. 4ab4_7.pdb 0 #Motif sequence .....LPAKALVDAGYDGIVSAGV .....TAYKALAQNGAKALIHAGT .GVGLSVIMGCKAAGAARIIGV.. ....ENDLDIALRIGARFIGIN.. ....EEEQERAIALGAKVVGIN.. ....AEDARLAVQHGAAGIIV... .AVGLAAVMGCHSAGAKRIIAV.. IKEYVQAAKNSIAAGADGVEIH.. #Loop sequence AGYD NGAK AGAA IGAR LGAK HGAA AGAK AGAD #Fingerprint A G A K : : : : : : : : : : : A H : : : I : : D L : : : N : Y R #Geometry parameters DISTANCE 10.28 ( 0.34) Vector1 ( 0.28 -0.96 -0.08) Vector2 ( -0.64 0.77 0.05) Vector3 ( -0.77 -0.63 0.14) Struc diversity(A) ( 1.1 1.6 1.0 1.6) #Key residues 0.0 0.0 0.0 0.0) 0.0 0.0 0.0 0.0) #RMSD matrix of conformation of loops (A) 0.00 1.20 0.34 0.87 0.69 0.91 0.27 1.18 1.20 0.00 0.99 0.93 1.03 0.77 1.12 0.60 0.34 0.99 0.00 0.76 0.61 0.67 0.20 0.94 0.87 0.93 0.76 0.00 0.70 0.99 0.81 1.11 0.69 1.03 0.61 0.70 0.00 0.69 0.72 1.19 0.91 0.77 0.67 0.99 0.69 0.00 0.84 0.74 0.27 1.12 0.20 0.81 0.72 0.84 0.00 1.04 1.18 0.60 0.94 1.11 1.19 0.74 1.04 0.00 #Sequence identities difference matrix of loop (%) 0.0 75.0 50.0 75.0 75.0 75.0 50.0 25.0 75.0 0.0 50.0 50.0 25.0 50.0 25.0 50.0 50.0 50.0 0.0 50.0 50.0 25.0 25.0 25.0 75.0 50.0 50.0 0.0 50.0 50.0 50.0 50.0 75.0 25.0 50.0 50.0 0.0 50.0 25.0 50.0 75.0 50.0 25.0 50.0 50.0 0.0 50.0 50.0 50.0 25.0 25.0 50.0 25.0 50.0 0.0 25.0 25.0 50.0 25.0 50.0 50.0 50.0 25.0 0.0 #Sequence identities difference matrix of motif (%) 0.0 54.0 83.0 69.0 79.0 62.0 83.0 75.0 54.0 0.0 83.0 75.0 71.0 67.0 75.0 76.0 83.0 83.0 0.0 72.0 76.0 67.0 33.0 75.0 69.0 75.0 72.0 0.0 46.0 54.0 75.0 79.0 79.0 71.0 76.0 46.0 0.0 58.0 75.0 67.0 62.0 67.0 67.0 54.0 58.0 0.0 71.0 75.0 83.0 75.0 33.0 75.0 75.0 71.0 0.0 75.0 75.0 76.0 75.0 79.0 67.0 75.0 75.0 0.0 #Sequence identities difference matrix of global PDB chains (%) 0.0 53.0 81.0 84.0 83.0 85.0 84.0 83.0 53.0 0.0 82.0 86.0 83.0 84.0 81.0 85.0 81.0 82.0 0.0 86.0 82.0 83.0 45.0 81.0 84.0 86.0 86.0 0.0 81.0 84.0 86.0 83.0 83.0 83.0 82.0 81.0 0.0 81.0 81.0 82.0 85.0 84.0 83.0 84.0 81.0 0.0 82.0 83.0 84.0 81.0 45.0 86.0 81.0 82.0 0.0 81.0 83.0 85.0 81.0 83.0 82.0 83.0 81.0 0.0 #FASTA SCORE matrix of loop sequence - 4 9 3 3 2 10 19 - - 11 13 15 13 18 11 - - - 10 10 16 17 16 - - - - 18 7 15 10 - - - - - 9 17 10 - - - - - - 10 9 - - - - - - - 17 - - - - - - - - #FASTA SCORE matrix of motif sequence - 34 -1 -14 -11 22 6 29 - - 9 -5 -1 17 19 5 - - - -6 -4 - 91 -4 - - - - 50 20 -9 3 - - - - - 20 -7 22 - - - - - - 1 29 - - - - - - - 1 - - - - - - - - #FASTA SCORE matrix of global PDB chain sequence - 992 -102 -112 -179 -79 -131 -109 - - -71 -135 -153 -66 -114 -143 - - - -193 -98 -62 1459 -102 - - - - -14 -138 -181 -211 - - - - - -103 -88 -129 - - - - - - -86 -94 - - - - - - - -67 - - - - - - - -