#Head information
NAME            5bb1
TYPE            beta-beta
REPRESENTATIVE  1opg-H_34
MEMBERS         10
CLUSTER         7

#Loop element
>1opg-H_34     ..mswvrqTPEKRlewvaai..  5bb1_0.pdb 	0
>1vge-H_34     .glhwvrqAPGQRlewmgwis.  5bb1_1.pdb 	1
>1gaf-H_34     ..mhwvkqRPKQGlewigrid.  5bb1_2.pdb 	1
>1hil-B_33     .gmswvrqTPDKRlewvati..  5bb1_3.pdb 	0
>1ikf-H_34     ..mywvrqNSEKRlewvafi..  5bb1_4.pdb 	0
>1flr-H_33     .wmnwvrqSPEKGlewvaqi..  5bb1_5.pdb 	2
>1ngq-H_33     .wmhwvkqRPGRGlewigri..  5bb1_6.pdb 	3
>2cgr-H_33     .wiewvkeRPGHGlewigeil.  5bb1_7.pdb 	4
>  1bec_29     .nmywyrqDTGHGlrlihysyg  5bb1_8.pdb 	5
>1etb-1_21     .avhvfrkAADDTwepfasgk.  5bb1_9.pdb 	6

#Motif sequence
..MSWVRQTPEKRLEWVAAI..
.GLHWVRQAPGQRLEWMGWIS.
..MHWVKQRPKQGLEWIGRID.
.GMSWVRQTPDKRLEWVATI..
..MYWVRQNSEKRLEWVAFI..
.WMNWVRQSPEKGLEWVAQI..
.WMHWVKQRPGRGLEWIGRI..
.WIEWVKERPGHGLEWIGEIL.
.NMYWYRQDTGHGLRLIHYSYG
.AVHVFRKAADDTWEPFASGK.

#Loop sequence
TPEKR
APGQR
RPKQG
TPDKR
NSEKR
SPEKG
RPGRG
RPGHG
DTGHG
AADDT

#Fingerprint
R P G K G 
: : : : : 
: : : : : 
A : : : : 
: : E H : 
T : : : R 
: : : Q : 
D A D : : 
N S : D : 
S T K R T 

#Geometry parameters
DISTANCE                 4.65 ( 0.59)
Vector1                 (    0.29   -0.95    0.13)
Vector2                 (   -0.41    0.90    0.14)
Vector3                 (   -0.06    0.02   -1.00)
Struc diversity(A)      (  3.7  6.0  5.0  4.9  3.2)

#RMSD matrix of conformation of loops (A)
 0.00 1.68 1.93 0.51 0.51 1.48 2.32 2.48 2.65 2.74
 1.68 0.00 0.73 1.80 1.66 1.69 1.40 1.82 2.17 3.61
 1.93 0.73 0.00 2.17 1.93 2.06 1.43 2.37 2.63 3.94
 0.51 1.80 2.17 0.00 0.67 1.38 2.52 2.45 2.62 2.58
 0.51 1.66 1.93 0.67 0.00 1.39 2.39 2.46 2.69 3.03
 1.48 1.69 2.06 1.38 1.39 0.00 2.22 2.34 2.26 3.16
 2.32 1.40 1.43 2.52 2.39 2.22 0.00 1.80 1.73 3.73
 2.48 1.82 2.37 2.45 2.46 2.34 1.80 0.00 1.41 3.54
 2.65 2.17 2.63 2.62 2.69 2.26 1.73 1.41 0.00 3.12
 2.74 3.61 3.94 2.58 3.03 3.16 3.73 3.54 3.12 0.00

#Sequence identities difference matrix of loop (%)
  0.0 60.0 80.0 20.0 40.0 40.0 80.0 80.0100.0100.0
 60.0  0.0 60.0 60.0 80.0 80.0 60.0 60.0 80.0 80.0
 80.0 60.0  0.0 80.0100.0 60.0 40.0 40.0 80.0100.0
 20.0 60.0 80.0  0.0 60.0 60.0 80.0 80.0100.0 80.0
 40.0 80.0100.0 60.0  0.0 60.0100.0100.0100.0100.0
 40.0 80.0 60.0 60.0 60.0  0.0 60.0 60.0 80.0100.0
 80.0 60.0 40.0 80.0100.0 60.0  0.0 20.0 60.0100.0
 80.0 60.0 40.0 80.0100.0 60.0 20.0  0.0 40.0100.0
100.0 80.0 80.0100.0100.0 80.0 60.0 40.0  0.0100.0
100.0 80.0100.0 80.0100.0100.0100.0100.0100.0  0.0

#Sequence identities difference matrix of motif (%)
  0.0 45.0 45.0 14.0 18.0 23.0 45.0 59.0 73.0 77.0
 45.0  0.0 41.0 41.0 50.0 50.0 41.0 50.0 73.0 73.0
 45.0 41.0  0.0 50.0 50.0 45.0 18.0 36.0 68.0 82.0
 14.0 41.0 50.0  0.0 27.0 27.0 45.0 59.0 73.0 73.0
 18.0 50.0 50.0 27.0  0.0 27.0 50.0 64.0 68.0 77.0
 23.0 50.0 45.0 27.0 27.0  0.0 36.0 50.0 68.0 77.0
 45.0 41.0 18.0 45.0 50.0 36.0  0.0 27.0 64.0 82.0
 59.0 50.0 36.0 59.0 64.0 50.0 27.0  0.0 68.0 86.0
 73.0 73.0 68.0 73.0 68.0 68.0 64.0 68.0  0.0 91.0
 77.0 73.0 82.0 73.0 77.0 77.0 82.0 86.0 91.0  0.0

#Sequence identities difference matrix of global PDB chains (%)
  0.0 44.0 46.0 20.0 16.0 29.0 29.0 39.0 72.0 85.0
 44.0  0.0 24.0 42.0 45.0 46.0 36.0 40.0 75.0 84.0
 46.0 24.0  0.0 45.0 47.0 45.0 32.0 40.0 73.0 85.0
 20.0 42.0 45.0  0.0 22.0 22.0 34.0 35.0 72.0 87.0
 16.0 45.0 47.0 22.0  0.0 31.0 32.0 40.0 71.0 87.0
 29.0 46.0 45.0 22.0 31.0  0.0 37.0 37.0 73.0 86.0
 29.0 36.0 32.0 34.0 32.0 37.0  0.0 26.0 70.0 85.0
 39.0 40.0 40.0 35.0 40.0 37.0 26.0  0.0 74.0 84.0
 72.0 75.0 73.0 72.0 71.0 73.0 70.0 74.0  0.0 85.0
 85.0 84.0 85.0 87.0 87.0 86.0 85.0 84.0 85.0  0.0

#FASTA SCORE matrix of loop sequence
    -   16    9   30   18   21    6    3   -8   -1
    -    -   10   18    4    7   14   14    3    2
    -    -    -    7   -2   20   24   24    4   -6
    -    -    -    -   14   17    8    5   -6    5
    -    -    -    -    -    9   -5   -8   -2    -
    -    -    -    -    -    -   17   14    4   -1
    -    -    -    -    -    -    -   33   13   -8
    -    -    -    -    -    -    -    -   23   -7
    -    -    -    -    -    -    -    -    -   -6
    -    -    -    -    -    -    -    -    -    -

#FASTA SCORE matrix of motif sequence
    -   81   78  117   95  103   75   63   25    5
    -    -   91   91   76   73   92   73   36   10
    -    -    -   77   69   94  125   94   36    -
    -    -    -    -   92   96   75   62   27   12
    -    -    -    -    -   85   66   49   47    5
    -    -    -    -    -    -  106   93   34    3
    -    -    -    -    -    -    -  122   44   -4
    -    -    -    -    -    -    -    -   38  -14
    -    -    -    -    -    -    -    -    -   -6
    -    -    -    -    -    -    -    -    -    -

#FASTA SCORE matrix of global PDB chain sequence
    -  860  788 1144 1237 1032 1068  889  173 -149
    -    - 1082  860  832  782  952  872  173 -117
    -    -    -  783  780  821  986  857  160 -126
    -    -    -    - 1119 1110  978  956  185 -145
    -    -    -    -    -  979 1023  854  203 -153
    -    -    -    -    -    -  939  953  161 -134
    -    -    -    -    -    -    - 1073  249 -145
    -    -    -    -    -    -    -    -  177 -127
    -    -    -    -    -    -    -    -    - -168
    -    -    -    -    -    -    -    -    -    -