#Head information NAME 7ab0 TYPE alpha-beta REPRESENTATIVE 1rro_79 MEMBERS 8 CLUSTER 4 #Loop element > 1rro_79 ........esetkslmdaaDNDGDGKig 7ab0_0.pdb 0 > 1cdp_79 ........dgetktflkagDSDGDGKig 7ab0_1.pdb 1 >1rtp-1_79 ........aketktlmaagDKDGDGKig 7ab0_2.pdb 1 > 5pal_79 ........dtetkallaagDSDHDGKig 7ab0_3.pdb 1 > 1pal_78 ........daetkafladgDKDGDGMig 7ab0_4.pdb 1 > 1lin_43 ........eaelqdminevDADGNGTid 7ab0_5.pdb 1 >2scp-B_130 ...........apasfdaiDTNNDGLls 7ab0_6.pdb 2 > 1sra_112 .........hcttrffetcDLDNDKYia 7ab0_7.pdb 3 #Motif sequence ........ESETKSLMDAADNDGDGKIG ........DGETKTFLKAGDSDGDGKIG ........AKETKTLMAAGDKDGDGKIG ........DTETKALLAAGDSDHDGKIG ........DAETKAFLADGDKDGDGMIG ........EAELQDMINEVDADGNGTID ...........APASFDAIDTNNDGLLS .........HCTTRFFETCDLDNDKYIA #Loop sequence DNDGDGK DSDGDGK DKDGDGK DSDHDGK DKDGDGM DADGNGT DTNNDGL DLDNDKY #Fingerprint D K D G D G K : : : : : : : : S : : : : : : : : : : : : : A : : : : L : L : N : : M : N : : : : T : T N H N K Y #Geometry parameters DISTANCE 6.12 ( 0.26) Vector1 ( -0.44 -0.66 0.61) Vector2 ( -0.31 -0.25 0.92) Vector3 ( 0.05 0.81 0.58) Struc diversity(A) ( 1.4 3.3 3.9 4.1 4.0 3.2 3.0) #Key residues 0.0 -0.1 0.0 0.1 0.0 0.2 0.1) 0.0 -0.1 0.0 0.1 0.0 0.2 0.0) #RMSD matrix of conformation of loops (A) 0.00 1.08 0.80 0.82 1.02 1.59 2.27 3.33 1.08 0.00 0.45 0.57 0.34 0.75 1.49 2.59 0.80 0.45 0.00 0.56 0.36 1.14 1.58 2.68 0.82 0.57 0.56 0.00 0.55 1.08 1.98 3.08 1.02 0.34 0.36 0.55 0.00 0.98 1.49 2.62 1.59 0.75 1.14 1.08 0.98 0.00 1.68 2.66 2.27 1.49 1.58 1.98 1.49 1.68 0.00 1.42 3.33 2.59 2.68 3.08 2.62 2.66 1.42 0.00 #Sequence identities difference matrix of loop (%) 0.0 14.0 14.0 29.0 29.0 43.0 57.0 57.0 14.0 0.0 14.0 14.0 29.0 43.0 57.0 57.0 14.0 14.0 0.0 29.0 14.0 43.0 57.0 57.0 29.0 14.0 29.0 0.0 43.0 57.0 57.0 57.0 29.0 29.0 14.0 43.0 0.0 43.0 57.0 57.0 43.0 43.0 43.0 57.0 43.0 0.0 71.0 71.0 57.0 57.0 57.0 57.0 57.0 71.0 0.0 57.0 57.0 57.0 57.0 57.0 57.0 71.0 57.0 0.0 #Sequence identities difference matrix of motif (%) 0.0 29.0 21.0 29.0 36.0 46.0 54.0 54.0 29.0 0.0 21.0 18.0 21.0 50.0 57.0 50.0 21.0 21.0 0.0 21.0 25.0 50.0 57.0 54.0 29.0 18.0 21.0 0.0 21.0 54.0 54.0 54.0 36.0 21.0 25.0 21.0 0.0 46.0 57.0 50.0 46.0 50.0 50.0 54.0 46.0 0.0 64.0 61.0 54.0 57.0 57.0 54.0 57.0 64.0 0.0 54.0 54.0 50.0 54.0 54.0 50.0 61.0 54.0 0.0 #Sequence identities difference matrix of global PDB chains (%) 0.0 51.0 49.0 56.0 56.0 76.0 86.0 81.0 51.0 0.0 42.0 50.0 22.0 81.0 83.0 83.0 49.0 42.0 0.0 41.0 47.0 80.0 80.0 84.0 56.0 50.0 41.0 0.0 52.0 76.0 82.0 81.0 56.0 22.0 47.0 52.0 0.0 77.0 81.0 81.0 76.0 81.0 80.0 76.0 77.0 0.0 77.0 82.0 86.0 83.0 80.0 82.0 81.0 77.0 0.0 83.0 81.0 83.0 84.0 81.0 81.0 82.0 83.0 0.0 #FASTA SCORE matrix of loop sequence - 47 46 37 38 32 23 16 - - 46 41 38 34 25 17 - - - 36 44 32 22 17 - - - - 28 24 26 18 - - - - - 32 28 19 - - - - - - 19 12 - - - - - - - 21 - - - - - - - - #FASTA SCORE matrix of motif sequence - 89 92 83 72 56 34 22 - - 93 95 94 43 24 27 - - - 89 86 39 19 19 - - - - 88 34 29 18 - - - - - 47 24 25 - - - - - - 19 4 - - - - - - - 26 - - - - - - - - #FASTA SCORE matrix of global PDB chain sequence - 351 355 325 309 66 -89 -62 - - 382 309 536 56 -70 -65 - - - 421 365 79 -67 -77 - - - - 304 92 -76 -58 - - - - - 60 -79 -47 - - - - - - 37 -2 - - - - - - - -21 - - - - - - - -